Scaffold Ga0306907_1000474

Overview

Basic Information

• Taxon OID: 3300028366
• Scaffold ID: Ga0306907_1000474
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17422
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011984	Metagenome	285	Y
F044223	Metagenome	155	N
F059487	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306907_100047410	F059487	GAG	MNPIDRFVDRVVIRSACPVEPCASQSWVKMRAGAVAFLATMPGLYMMNQGFETVGWIVAVANMLIAINIISTRVNQRIEHGHTCGRTDIGTSSEDQQ
Ga0306907_100047411	F044223	N/A	MSDKTTIGLKVSHERNSRIERKVDDAGYQSRQAYIRQLIDDDLGGFDTTVESSTTQHTPDDRRDAEIYDAILDHIPLEGWTRFGRFKGDIAQSTGYGKDALFGELKSLRRNGFCTIRVLNPTDENPHYEIKVKPPAADPEQWTHHETDDRPDLFGHGVPDDNETNAAKHHLLFAIEDGDEELIDGFDLQEFGLRRVDCEDDDRLVAPIDEPNHEIKDEVDRISHGTPNSHIETQLSRTSREQAIEDLREAEELTNDSETDA
Ga0306907_100047425	F059487	GGTGG	MNPIDRFVDRVVIRSACPVEPCASQSWVKMRLGAVAFLATMPGLYMMNQGFETVGWIVAVANMLITINIMSTRVNQRVEHGHTCGRTDIGTSSEDQQ
Ga0306907_10004749	F011984	GGAGG	VRPVICDSCQMRIDDSWAGPAIEVKVHNGVDTDVSGDYCVDCAGEIADAIRSVIEDTTGVKDE