NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_107175

Scaffold Ga0306872_107175


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_107175 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1976
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005137Metagenome411N
F025910Metagenome199N

Sequences

Protein IDFamilyRBSSequence
Ga0306872_1071751F025910N/AMKLTTKENITNEQWKDQAERFSSIADAVNSLTFPKKDVNEMPATIEMEVLQPLSKGFKGRVIYTQQFEKI
Ga0306872_1071753F005137N/ATNKPISASSYILLATDVDKFLIFSNACTVVVPNGLAANLEFQGKQGGTGQITFSAESGGTLNVPSVFLAETAEQHCFFGIRTDGSDVSTILGTLKLA

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