Scaffold Ga0306872_101201

Overview

Basic Information

• Taxon OID: 3300028361
• Scaffold ID: Ga0306872_101201
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8157
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (30.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013253	Metagenome	273	Y
F054483	Metagenome	139	N
F100124	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306872_10120113	F054483	N/A	MQEYTSPMTFKKPDLSRFNFTVTGSASEQYGEQVAITAKLLGRPFFQLHKIFEKEGWTLEEITSAYQKATKHSGNCEPKIAWWANRKRRNKVGDN
Ga0306872_10120114	F100124	AGAAG	MFWNKKEVVEVDGLPITLSKRQAFNRFTGAITSRFLAYKDGDEWRGLVGYEQFREEMDETRKRQELILDHLKLKYVPETETKEPAKLVERTNYLTVNSGNVPSWTDWVVSEGSGCDQTPTPPKKKGRSKKK
Ga0306872_1012018	F013253	N/A	MEITKYTVELTSSEMFDLAYALEHRIEADLSLTTPLKDDGIFNDFECELKILQEFVSSFGYKLDVSCKTENGYKWENNPKKYDIAEDWLKDLLKQRRKELAAKNK