Scaffold Ga0306872_100095

Overview

Basic Information

• Taxon OID: 3300028361
• Scaffold ID: Ga0306872_100095
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38416
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (90.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018696	Metagenome / Metatranscriptome	233	Y
F019616	Metagenome / Metatranscriptome	228	Y
F031446	Metagenome / Metatranscriptome	182	Y
F043342	Metagenome / Metatranscriptome	156	Y
F043418	Metagenome / Metatranscriptome	156	Y
F046310	Metagenome / Metatranscriptome	151	Y
F048914	Metagenome / Metatranscriptome	147	Y
F100939	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306872_10009512	F048914	AGG	MTISLGQSAQIWNSDLNEFVSDDHVHMADVLQDLKPTYSLVYIPKNQRVDEQEKKKPWAIVDKPENLPEYVVRFLSDEDMKDPYKIIAWLFDGDVVRHGAENILKRIEAEDNAKKLLKSKKEIDDMEDRIDHIEFLASGGRDKKHTITHNGKKFER
Ga0306872_10009516	F100939	AGGAG	MYRTPGTQGNRLAPQKNENMSDEERKRKAREEAMMRRLSSAPGKTSSGMY
Ga0306872_10009521	F046310	GAG	MVITVDPGDTTGIAYWTDKGELIEKEMLDFDALIERVELLEGVTVIVCEDYRLRQGKQMVQTGSKFQAVQVIGALKAYAKRHKAKMVLQDASVLTVAALHSGVKRPSDHSKSHAVDAYNHGYYYFETKGLLQPKPL
Ga0306872_10009525	F043342	AGGA	MSDATDELKDFYNYMWGEEPTGTDTTFVYLPIEYEGKWTPYMFAWPRQREGVVRHTLKWSAIKANVFFSPALFKAANPAKENVLGSYVLWVDFDGNAPKEWSLDGENAVPRPTLVVQSSIEGHEHCYWKLDTFLDNIEVLEDRNRAIAYVMHADTSGWDADQILRPIRTTNHKRNMPVIIKEWEL
Ga0306872_10009526	F043418	AGGA	MGMLDDYGIDTSDIEAPSYDLEDGIYEMTVGDIYVKQGSQNFPDRSWVIIEYLVGEEGKKKSDLFELPADPENLTDRDRQKLGFYVARMLDLGVERDKVNDINREDLIGVSGTLTLYSSAGKGKNAGKVFQNIKNVKVSSSGASQPAQKIVRKTAAANPFAA
Ga0306872_10009530	F031446	AGGA	MSGIDLFEEAWIDANFKLYEPQADFETIDPEKRGVGRPMSEPSDITDIISTGRKRAAMLYPIFKDMKCEWAGLRYAGGGIEPIIGCAGNIIQPSKGPDKGDRHHGPDKNVINNGPNNVHRICSKCHNRWHALNNKYYGERPPADEPYIPIEEYKAHDYSSKATDKEIETNDGWWANKKKLLIDVDTN
Ga0306872_10009548	F019616	AGGAG	MDKNPYVRLRELCGMSQKKFADKHSFGKMTMVYLESGMYTKVSDRQSISLGKECAEKGIDAKQIIVSEYGTPSLNEAYLAWRSEDRRLKAPSVLAEAAPPFNGNGDLSPVAVFVKETTGSLQGFCKLLKIPSITMTRYMRGETMAMPDALRAALSDIKYPHTEALEAAQLKWVP
Ga0306872_10009552	F018696	AGGAG	VPDEFEQFDGGVAVRLPDGSTQHIATPEGFTDSAFRGTLAAFDTAYRRNGKQPTVNQVHELWPKLSKKVISGVLSTLEFQEALNHRGINWTPKSGLTMEQQTALLKLSDPFDRRGLATKLKDLGTPMPRFQAWLKQPLFFELYNQQTQNNYTEALPAIRQRLIGNAEAGDQRAIELVFAMTGEWNPQQQHLEDARTIIIKVVEAIITHVKDAKVREAILSDVSLYAGTMSTIGQQKTLEK