Scaffold Ga0306914_121432

Overview

Basic Information

• Taxon OID: 3300028360
• Scaffold ID: Ga0306914_121432
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica - Metagenome #681 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 618
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep Lake
• Coordinates
  • Lat. (^o): -68.5602
  • Long. (^o): 78.1968

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007732	Metagenome	346	Y
F084902	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306914_1214321	F007732	N/A	STTSRSNHAGSGCNLPNDSCATTPERRDIRPGNRIMSYEIIVSSTEALYDDYANPKSQTPSGYAPYGFAGIVVNDCDIICGNCATDEELVDNDNDAIFGSAEWDYPAPVCEDCQKPLNVDLPVYKSHDPELLFRLRMTEELGDFADTDCLTIEEIGAKAAERAATIVWLRGWNG
Ga0306914_1214322	F084902	GAG	VQRLPNALRQLSGYEDGTGKGTYNTTPTNIVYDIHKEDVLPAFREAYHTE