NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306879_112309

Scaffold Ga0306879_112309


Overview

Basic Information
Taxon OID3300028359 Open in IMG/M
Scaffold IDGa0306879_112309 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #49 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)722
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038482Metagenome166Y
F065262Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0306879_1123091F065262N/AMSDTDDTPTVNGVALDSVSGVANAFEYLDEPYNVGDIAVRSSEDLVIIQSRGTHFANMDALLQAQKQGHISIQSINAGT
Ga0306879_1123092F038482GAGGVGLKRIATLKSKTTIYRIAMSEKLTKADDLCSELAETLSQNPGTVKITIEIPHPTLGTTIVTDDKISQMAAGELFKLDRRPQARIARD

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