NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306894_111064

Scaffold Ga0306894_111064


Overview

Basic Information
Taxon OID3300028354 Open in IMG/M
Scaffold IDGa0306894_111064 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #397 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074233Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0306894_1110642F074233N/AMNVTKNKISKFSKLIGIALVAMLAFGGLSGAVSAQEENMGDINVTVEDNGTAVNAQNMTLMNAADDTEVEVLETDSEGIVSFTEISYGEYYLNYNDSAGVAYDSATFETQTEVSLVDWDVDANTLTLEDGSGNLIEEYVGTQDDFVVTDVLSEESNNASTLIGYAGVVAGTVITLIILIISLIITLRIFRNI

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