NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306887_107908

Scaffold Ga0306887_107908


Overview

Basic Information
Taxon OID3300028352 Open in IMG/M
Scaffold IDGa0306887_107908 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #138 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076655Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0306887_1079082F076655GGAGMLLEEAINKLVRDSVNLVLETPGYTIRSKQRDAPRPQGPYAVVDFLASESIGLEQRVFEDNDDNLDLTEKISGLRNITMSINFYRANATGNSRNARIGLVRESIQSLFSSAGVGLVSRSEVRDIDSPTDDGWEERSQFDLVLNTVATDQDIVKSIQAIDITS

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