Scaffold Ga0306915_100382

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306915_100382

Scaffold Ga0306915_100382

Overview

Basic Information
Taxon OID	3300028349 Open in IMG/M
Scaffold ID	Ga0306915_100382 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #1 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17179
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Deep Lake
Coordinates	Lat. (^o)	-68.5627	Long. (^o)	78.1882	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045454	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306915_10038214	F045454	GGA	VSDEVNNMRSWRVLETIEKRLSGIEGKLEKVIRLEERVDKHEQVMARFGKRLDSGDERIKKVEMWQAEHNPDMIISTLKANADTIDILRGKIGDLEDTSNVNRGHKDIGKGVLMWTSSILAAIIIYQATRGI

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