Scaffold Ga0306905_105098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306905_105098

Scaffold Ga0306905_105098

Overview

Basic Information
Taxon OID	3300028344 Open in IMG/M
Scaffold ID	Ga0306905_105098 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Club Lake, Antarctica - Metagenome TFF #397 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1330
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Club Lake
Coordinates	Lat. (^o)	-68.5417	Long. (^o)	78.2467	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002703	Metagenome	536	Y
F048679	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306905_1050981	F048679	AGGA	MRLKVYLLLALAHYCGVQQGALQIASGLGANTLSVWKTNDRHPTAHRFYKAQSALIDMADLPAEYKNLEIEAVARIVIK
Ga0306905_1050984	F002703	N/A	VGSGEMSTASLSDKLAHAKRESKALKAQLQASKLKAEELLAAFDESVYTPRVIARRNMFKRARDKYNER

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