NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306874_113971

Scaffold Ga0306874_113971


Overview

Basic Information
Taxon OID3300028343 Open in IMG/M
Scaffold IDGa0306874_113971 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Club lake, Antarctica - Metagenome #315 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)675
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Club lake
CoordinatesLat. (o)-68.5417Long. (o)78.2467Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027372Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0306874_1139711F027372GGAGMSDEIIVSSTEALYDDYANLKSQTPFGYTTYGLAGIVVNNCDIICGNCATDEELADNYNGTIFANSEWDYPAPVCEDEDCQKPLNVNLLVYKSHDPKLHFRLRMTEVLGGFADRDCYTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAQYANNIAPQLRQLSGYEDGTGKGTYNITPTDIVYDIHREDVLPAFQEA

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