Scaffold Ga0306874_106786

Overview

Basic Information

• Taxon OID: 3300028343
• Scaffold ID: Ga0306874_106786
• Source Dataset Name: Saline lake microbial communities from Club lake, Antarctica - Metagenome #315 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1205
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Club lake
• Coordinates
  • Lat. (^o): -68.5417
  • Long. (^o): 78.2467

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011984	Metagenome	285	Y
F085171	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306874_1067861	F011984	N/A	VSVRPVICDCCQIRIDDSWASPALEVKVHNGVDTDVSGDFCVDCVGDIADAIRSVIAGHNNSNSEGKR
Ga0306874_1067862	F085171	GGAGG	MNKNKHTDLDGLIDLDRRSLIKLGNSAVVSIPRADELGIIGNIEELDAAVSVRLVDSNQIIIEARVDLSNVELGDIDLTLD