NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306882_119622

Scaffold Ga0306882_119622


Overview

Basic Information
Taxon OID3300028342 Open in IMG/M
Scaffold IDGa0306882_119622 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #81 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F020827Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0306882_1196221F020827N/AMDEAKQPTVKHDIAGWYEIGQLWKGGQLRYFYIDHIRVLEFDDSDRIEVEYYLSDGTMITKLTVTAPDVLPVVKNIEP
Ga0306882_1196222F006455GGAMNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIEREGRSSHNIVTLPENYYQDNQVIDYVEVGVEPEDAAETAHEWMKQNNRQ

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