Scaffold Ga0306882_103897

Overview

Basic Information

• Taxon OID: 3300028342
• Scaffold ID: Ga0306882_103897
• Source Dataset Name: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #81 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2364
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep lake
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002703	Metagenome	536	Y
F008667	Metagenome	330	N
F048679	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306882_1038973	F008667	GGAG	MTPGSADFRRANRNPSYQCLPRAEYVQRAVEMAPRGSQLAKKLTAHDVQAMRLNIHGRTDKHQAKVFGVSASMVYKDPQG
Ga0306882_1038974	F002703	GGAG	MSTASLADKLTHAKRESKALKAQLEASRIAYADQLAAFEKSIYMPAVVDRRDLFEKTRDKYNER
Ga0306882_1038977	F048679	AGGA	MRLKVYLLLALAHYCGVQQGALQIASGLGANTLSVWKTNDRHPTAERFYKAQSALIDMADLPVEYKNLEIESVARIVIK