Scaffold Ga0268261_10249405

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10249405
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1608
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000856	Metagenome	859	Y
F010252	Metagenome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_102494051	F000856	N/A	DKDICRGGEYHRLHVQFRPPDDGPVRPETCRGKRIADIVHKQKSSVSSWK
Ga0268261_102494052	F010252	AGGA	MQDNLPCKKITLDKPEGRRRVGRPNLRWMDGVMRDAERLGVRNWKSKAKDRDGWR