NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10219352

Scaffold Ga0268261_10219352


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10219352 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007175Metagenome356Y
F053625Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_102193524F053625N/AMLYREIIAVCSQIHTKHINTLCEQNVELLNVKLAVIKIQSVPRSKHTPSQL
Ga0268261_102193525F007175N/AMLYREIIAVCSQIHTKHINTLCKQNVELLNVKLAVYKDPVRTAQ
Ga0268261_102193526F007175N/AIIAVCSQIHTKHINTLCEQNVELLNVKLAVYKDPVRTAQ
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