Scaffold Ga0268261_10207404

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0268261_10207404

Scaffold Ga0268261_10207404

Overview

Basic Information
Taxon OID	3300028325 Open in IMG/M
Scaffold ID	Ga0268261_10207404 Open in IMG/M
Source Dataset Name	Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1790
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	laboratory colony in Florida, USA
Coordinates	Lat. (^o)	26.0625	Long. (^o)	-80.2332	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027050	Metagenome	196	Y
F061008	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_102074041	F061008	N/A	SRKRKTIGFRTEKKLADAVNEIVNDSDSDNTHNIPKIFKY
Ga0268261_102074044	F027050	N/A	MGTPYIYDISRLRVNVMLVLQSCTDSLQVLPGSASETFPTSSDGTCDVSNTAVQQDVAIVEERSIAVNEEAPIGIKEEEIPEDITFYGIKSEPDEVSYVWVCLLLDTI

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