NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10205261

Scaffold Ga0268261_10205261


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10205261 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1800
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000003Metagenome14941Y
F001642Metagenome659Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_102052611F000003N/AMLYREIMAVCFEIHTKHINTVCGQNVELLNVKLVIRIVTTGL
Ga0268261_102052612F001642N/AMLCREIIAVCSQIHTKHINTLCGQNVEFVNVKPGGTYSDHWALEG
Ga0268261_102052613F001642N/AMLYREIIDVCSHIHTKHINTLCGQNVEFVNVKPGGTYSDHWALEG
Ga0268261_102052615F000003N/AMLYREIIAVCSQIHTKHINTLCGQNVKFVNVRLVVHIVATEL
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