Scaffold Ga0268261_10145580

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10145580
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2151
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000003	Metagenome	14941	Y
F092286	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_101455801	F000003	N/A	MLYGEIMADCSEMHKKHVNTLCGQNVELLNVILAVHIVTTGV
Ga0268261_101455802	F000003	N/A	MLYGEIMAVCSEIHTKHINRLCGQNVKLLNVKLVVHIVTTGL
Ga0268261_101455803	F000003	N/A	MLYREIMAVCFEIHTKHINTLCGQNVELLNVKLVVHIVTTGLERVKCLLL
Ga0268261_101455804	F000003	N/A	MLYREIMVVCSEIHTKHINTLCGQNVELLNVKLVVHIVTTGLKMVKSQL
Ga0268261_101455805	F000003	N/A	MLYREIIAVCSEIHTKHISTLCGQNVELLNVKVMVHIVTTGLERVKCLLL
Ga0268261_101455806	F000003	N/A	MLYREIIAVCSQIHTKHINTLRGQNVELLNVKLVVHIVTTGLKMVKSLL
Ga0268261_101455807	F000003	N/A	MLYREIMAVCSVIHTKHKNTLCGQNVELLNVKLVVHIVTTGL
Ga0268261_101455808	F092286	N/A	MIDQKQLQNVESFKYLGSILTNDGRCTCEIKCRIAMAKAAFNKKR