NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10066830

Scaffold Ga0268261_10066830


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10066830 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3110
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000735Metagenome915Y
F002797Metagenome529Y
F044185Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_100668301F002797N/AKKVYEWSPALTRSLGRPKNRWEDDVKSDITRMKITNWKDCIRNWTKWKKLVEKAKTSLKL
Ga0268261_100668302F000735N/AMLDTRTVKKIFNWKPLTKRSQGRPKYRWEDNITQDICQMMIKNWIACVQDRGKWKEVVEKAKTFN
Ga0268261_100668304F044185N/AMHQSLSIIACHLNTAQHVLGIHMPIIRSLSTAVATSGLPLERGGSSIVGRGWSCCQQDRPQPTLLPPRSYGKPEVATAVDKILIMGMRMPETC

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