Scaffold Ga0268261_10031559

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10031559
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4381
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000019	Metagenome	6343	Y
F000031	Metagenome	4897	Y
F006225	Metagenome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_100315592	F000019	GGAG	MPLIVFQYISNKMQRYTFYLYLETALHVSGVTSIHHQERIQLYLQHRIFVTPLLLSADVVEELEQV
Ga0268261_100315594	F000031	AGGA	VTGRRRRRRRKLLYDLKERRGYSYLKEEALDRTTWRARFGRGFGPVVRQTAK
Ga0268261_100315595	F006225	AGGA	MANAAFYKKRALFTSTLDLDLGKKLMKCYIWSIALYCAETWTIRAVDRKNLESFEIWCWRRMEKISWTDHVRNKEVLLTVKEQRNILHEIRKRKANWIGHILRRNCLLQRVIEGKVRKG