Scaffold Ga0268261_10029915

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10029915
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4491
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008034	Metagenome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_100299151	F004007	GGA	VLLVQGSGNVAVLPAVTAVLLHHSAMDIWTDSSVVSAG
Ga0268261_100299152	F004007	GGA	VLLVQGSGKMAVLPAVTAVLLHHSAMDIWTDSSVVSAG
Ga0268261_100299154	F004007	GGA	VLLVQGSGKVAVLPAVTAVLLHHSAMDIWTDSSVVSAG
Ga0268261_100299155	F004007	GGA	VLLLVQGSGKMAVLLAVTAVLLHHSAMDIWTDSIVVSTG
Ga0268261_100299156	F008034	N/A	MGDSIEQWRATIGQWSGGRLRKWVTSQHHVAQTSDQVGYKYIRFLVLVSLLVIGCVELNPGPDTVSCVIRSNKLLRMWKAFVGKIIHVRWKKKRQIMVYLKL