Scaffold Ga0268261_10026166

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10026166
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4772
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y
F019492	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_100261662	F008821	N/A	VLFIHGLTAVLIVQGRGEMAVLPAATALLLRYSGMNTWTDCFVVSTG
Ga0268261_100261663	F019492	GGA	VLLAQGREEMVFLPAVTAVLLHHSAMDIWTDCSVVSTGERGNGVSACSYCSTVTSQCYLYMV
Ga0268261_100261664	F004007	GGA	MAVGLLVQGRGEIAVLPAVTAVLLHKSAMDMWTDYCC
Ga0268261_100261666	F004007	GGA	VLLVEGRGEMAVLPAVIAVLLHHSAMDIWTDFSVVSTG
Ga0268261_100261667	F004007	GGA	VLLVEGRGEMAVLPAVTAVLLHHSSMDIWTESSVVSRG