Basic Information | |
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Taxon OID | 3300028325 Open in IMG/M |
Scaffold ID | Ga0268261_10026166 Open in IMG/M |
Source Dataset Name | Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4772 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | laboratory colony in Florida, USA | |||||||
Coordinates | Lat. (o) | 26.0625 | Long. (o) | -80.2332 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004007 | Metagenome | 457 | Y |
F008821 | Metagenome | 327 | Y |
F019492 | Metagenome | 229 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0268261_100261662 | F008821 | N/A | VLFIHGLTAVLIVQGRGEMAVLPAATALLLRYSGMNTWTDCFVVSTG |
Ga0268261_100261663 | F019492 | GGA | VLLAQGREEMVFLPAVTAVLLHHSAMDIWTDCSVVSTGERGNGVSACSYCSTVTSQCYLYMV |
Ga0268261_100261664 | F004007 | GGA | MAVGLLVQGRGEIAVLPAVTAVLLHKSAMDMWTDYCC |
Ga0268261_100261666 | F004007 | GGA | VLLVEGRGEMAVLPAVIAVLLHHSAMDIWTDFSVVSTG |
Ga0268261_100261667 | F004007 | GGA | VLLVEGRGEMAVLPAVTAVLLHHSSMDIWTESSVVSRG |
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