Scaffold Ga0268261_10015897

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10015897
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6030
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_1001589713	F004007	GGA	VLIVEDRGEMVVLPAVTAVLLHHSAMDTWKDCSVDSTG
Ga0268261_100158972	F008821	GGTGG	VQLLQYYYITVLWIHGLTAVFLVQYSGETAFLCAVTALLLHHSAMDTWTDCIVISTI
Ga0268261_100158974	F004007	GGA	VLLVQGRGEMAVLPAVTAVLLHHSAKDIWTDCSVVSTG
Ga0268261_100158975	F004007	GGA	VLLVKSRDDMAVLSAVPAVLLHHNAMDIWTDCSVVSTG
Ga0268261_100158978	F004007	GGA	VLLVHGRGETAVLNEFTAVLIYQSAMDSWTESKNVSTG