Scaffold Ga0268261_10015291

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10015291
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6137
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037468	Metagenome	168	Y
F050744	Metagenome	145	Y
F103492	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_100152911	F037468	N/A	VVLLQNCVVLRSSELGLCATSSEVGNEVIRVQVEGISDVTEENQEPITSSLIRSDPGVGVMSVECLAFFIAIQDCLYVSL
Ga0268261_100152913	F050744	N/A	MTEQLQCAESTKPLHSTPFLVMTGHINVMLVLQSCTDSLHILPGSSSETFPTPSDGTCDFSNTAVEQDVVVVEERSIAVNKEAPTCIKQEEIAEDISFPNIKPEPNEVSYACVCLLLDIF
Ga0268261_100152915	F103492	GAG	MTPKEPKINKQAAAGITRHITLTKLEALETIRKHGNATCQSVITAAHEIGLLAI