NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10001017

Scaffold Ga0268261_10001017


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10001017 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18913
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023706Metagenome209Y
F090566Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_1000101719F023706GGAGLAGLVAPSQSSGSLKTTSMDTDISERAVSFETANMCMSMDMSGPLSNMAVGTTLNAMVTNTCLPAGQLPKKTHIYISGFRYTRTFLAWLRAFCPGVLTAQLKGEDLMVVPSTADVFRAAVSALRSLDEREGGFHTFTLPQDRCVRLQVKNLVRVCLRASSGRSWNP
Ga0268261_1000101724F090566AGGAMGEENCVEDLDEDGYHSLGKMLQGSVHVTVWARRLTELDTPDGFVNLVRVG

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