Scaffold Ga0268261_10000994

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10000994
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19039
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096186	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_1000099410	F096186	AGTAGG	MGVRCMPSVVFFMELISIEYIRGCRRRLHALTVARGVFTERTVSL
Ga0268261_1000099412	F096186	AGTAGG	MGVRYMPCVVFVMDLNSIEYIRGCRRGLHALTVARDVVIERTVTS
Ga0268261_1000099415	F096186	AGTAGG	MVVSCMPSVVFVMELNSIEYIRGCRRRLHALTVARVVVIERTVTS
Ga0268261_1000099416	F096186	AGTAGG	MGVRCMPSVVFVIELNSIEYIRGCRRRLHALTVARGVVIERTVTS
Ga0268261_1000099418	F096186	AGTAGG	MGVRCMPSVVFVMELNSIVYIRGCMRRLHAVTVARCVVIERTVTS
Ga0268261_1000099423	F096186	AGTAGG	MGVRCMPSVVFVMEINSIEYISSCRRRLHALTVARGVVIERTVTS
Ga0268261_1000099424	F096186	GGAG	MPSVVFAMELNTTEFIRGCRRRLHGLTVARGVVIERTAKS
Ga0268261_100009946	F096186	AGTAGG	MGVRCMPSVVFVMELNGIGYIGGCRRRLHALTVARSVVIERTVTS
Ga0268261_100009948	F096186	GGA	MPSVVFVMELKSIEYIRGCRRRLHDLTVATGVVIEITVTS