Scaffold Ga0268261_10000933

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10000933
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19513
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000031	Metagenome	4897	Y
F006225	Metagenome	378	Y
F017664	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_1000093313	F000031	GGA	VRGRRGKIRRKLLDDLKKRRRYSHLKEEALDRTMWRARFGRGFGLVVRQTTK
Ga0268261_1000093314	F006225	AGGA	MAKAAFNKKRALFTSTWDLELRKNLVKCYIWSIALYGAETWALWTVDQKYLESFEIWCWRRIEKITWTDYVRIKNYYLRVKEQRNILHKIRKWKANWIVYILRRNCLLQRVIE
Ga0268261_100009339	F017664	N/A	MLLKFTYLQSFTSLLVLSIVCGYVSLVTTLIAVACSQFQKLKVAILDIKQQHITPNHGLEDKQVHKAANCNLLKKLNACIQHHQNIIE