Scaffold Ga0268261_10000470

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10000470
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25217
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017241	Metagenome	242	Y
F020813	Metagenome	222	Y
F028031	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_1000047010	F017241	N/A	MKQLVFILLCLYLLCAEYEFETFGSTSDQIRLMRFYLHTDVIDVSLETIHSISDETAIITNDL
Ga0268261_1000047011	F028031	GGA	VQSEDIRLYANDMQRSYSEYMTEARIEPTEATGIYYLVFIPIVLNMSSKHLAVQVIKYV
Ga0268261_100004706	F020813	GGA	VPSDESCLYAKDMQRRYTEYGTKTRIEPTEATGIYSFVFIPYVC
Ga0268261_100004708	F020813	GGA	VQSDEIRLYENDMQRSYVEYGNETRIETTEATGIYSLVFKPYMCWI
Ga0268261_100004709	F020813	GGA	VPSDVIRLYVNDMQRRYTEYGTKTTIEPNEATGIYSFVFIPFMC