Scaffold Ga0268261_10000140

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10000140
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44336
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (72.06%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y
F019492	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_1000014010	F004007	GGA	VLLVRGRVELAILPPITAVLLHHNAMDIWTDCSVVSRG
Ga0268261_1000014011	F019492	GGA	VLLVQGRGEMAALRAVTAVLLHHSAMDIWTECSVVSTGQRENGDSASNYCSTVTSQCYGYVD
Ga0268261_1000014012	F008821	N/A	MRVLLIHELTAVMLVQGRGEMAVLPADTAVLLHHSAMDTWTDCSVVSTG
Ga0268261_1000014028	F004007	GGA	VLLVQGSAEMAVLPAVTAVLLHHFSMDSWKDNSVISRG
Ga0268261_1000014030	F019492	GAG	MTVPSAVTAVLIHHSAMDVWTDCNVVSTGKRGNGGSVCSYSNTVALQCYGYMD
Ga0268261_1000014031	F019492	GAG	MAVLPAVTAVQLHHSAMDKRTDFTVVSTVQRANCSSACSYCNTVTSQCYGYMD
Ga0268261_1000014032	F019492	GAG	MADLSAVTAVLIHHSAMDMLSDCSVVSTVQRGNGSSDCSYCSTDTSDCYGNMD
Ga0268261_1000014033	F008821	N/A	VLWIHGLNAVSLVKGRVDMAVLPAVTAVLLHHSAMDTWTDCSVVSTG
Ga0268261_100001404	F008821	N/A	MLWIHGLRVALLVQGRGEMAILPAFTAVVFHHSAMDTWTDVSVVSTG
Ga0268261_1000014040	F008821	N/A	MLWIHGLTLVLLVQGSAEIAVLPAVTAVLLHHSSIDTWKDISVVSTG
Ga0268261_1000014045	F008821	N/A	VLWINGQTVVLLVQGRGEIPVQPTVTAVLLHYSVMDTWTDCSVVSTG
Ga0268261_1000014055	F008821	AGGA	VLLIHGLTVVLLVQGRGEMAVLPSVTAGLIDHSVIDTWTGCTVVSTG
Ga0268261_1000014057	F008821	AGGA	VLLTHGLTVVFLVQGRGKMAILPEVTAGLLHHSVMDTWTDCSDVSTG
Ga0268261_1000014058	F019492	GGA	VLLVQGRGEMAILPAFTAGLLHQSVMDTWTDSSVVSTGYRGNGGSACSYFRIDTSQCY
Ga0268261_1000014059	F008821	AGGA	VLWTHGLNVVLLVQGRGEMAIKPAFTAGLLHQSVMDTWTDCSVVSTG