NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10000140

Scaffold Ga0268261_10000140


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10000140 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44336
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (72.06%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004007Metagenome457Y
F008821Metagenome327Y
F019492Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_1000014010F004007GGAVLLVRGRVELAILPPITAVLLHHNAMDIWTDCSVVSRG
Ga0268261_1000014011F019492GGAVLLVQGRGEMAALRAVTAVLLHHSAMDIWTECSVVSTGQRENGDSASNYCSTVTSQCYGYVD
Ga0268261_1000014012F008821N/AMRVLLIHELTAVMLVQGRGEMAVLPADTAVLLHHSAMDTWTDCSVVSTG
Ga0268261_1000014028F004007GGAVLLVQGSAEMAVLPAVTAVLLHHFSMDSWKDNSVISRG
Ga0268261_1000014030F019492GAGMTVPSAVTAVLIHHSAMDVWTDCNVVSTGKRGNGGSVCSYSNTVALQCYGYMD
Ga0268261_1000014031F019492GAGMAVLPAVTAVQLHHSAMDKRTDFTVVSTVQRANCSSACSYCNTVTSQCYGYMD
Ga0268261_1000014032F019492GAGMADLSAVTAVLIHHSAMDMLSDCSVVSTVQRGNGSSDCSYCSTDTSDCYGNMD
Ga0268261_1000014033F008821N/AVLWIHGLNAVSLVKGRVDMAVLPAVTAVLLHHSAMDTWTDCSVVSTG
Ga0268261_100001404F008821N/AMLWIHGLRVALLVQGRGEMAILPAFTAVVFHHSAMDTWTDVSVVSTG
Ga0268261_1000014040F008821N/AMLWIHGLTLVLLVQGSAEIAVLPAVTAVLLHHSSIDTWKDISVVSTG
Ga0268261_1000014045F008821N/AVLWINGQTVVLLVQGRGEIPVQPTVTAVLLHYSVMDTWTDCSVVSTG
Ga0268261_1000014055F008821AGGAVLLIHGLTVVLLVQGRGEMAVLPSVTAGLIDHSVIDTWTGCTVVSTG
Ga0268261_1000014057F008821AGGAVLLTHGLTVVFLVQGRGKMAILPEVTAGLLHHSVMDTWTDCSDVSTG
Ga0268261_1000014058F019492GGAVLLVQGRGEMAILPAFTAGLLHQSVMDTWTDSSVVSTGYRGNGGSACSYFRIDTSQCY
Ga0268261_1000014059F008821AGGAVLWTHGLNVVLLVQGRGEMAIKPAFTAGLLHQSVMDTWTDCSVVSTG

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