Scaffold Ga0208280

Basic Information
Taxon OID	3300028323 Open in IMG/M
Scaffold ID	Ga0208280_1056 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208280_1056 Open in IMG/M

Source Dataset Name

Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5133
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5133

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Deep Lake, Antarctica
Coordinates	Lat. (^o)	-68.5563	Long. (^o)	78.1877	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Deep Lake, Antarctica

Coordinates

Lat. (^o)

-68.5563

Long. (^o)

78.1877

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F020827	Metagenome	222	Y
F027372	Metagenome	195	Y
F058558	Metagenome	135	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208280_105610	F006455	GGA	MYQQVKPPAGWTEIEPEFEFQHQTFQRRRDGLVVAIELERMSFYNVVTLPENYYQEDQVIDCIEIGVEPEDAAETAREWMEQNNRQ
Ga0208280_10565	F058558	GGA	MNINDKFQHRAFKAVVKTDDHDVAENEIMAGLSSVGVNDDEYRMLWTRDNFNTSSHNHVAAIFIVPTEYMADLPTLVERGNAISINEVELQSVDA
Ga0208280_10566	F020827	N/A	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLSDGTMITKLTVTVFDVLPVVKNIEPVEKPDHL
Ga0208280_10567	F027372	GGAG	MSDEIIVSSTEALYDDYANLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYKLYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAKIGREYAPTDMFAPDEHYEIPTDSAQYSNNIAPQLRQLAGYEDGTGKGTYNTLSTDIGYYIHKEDVLPAFREAYHSEAINRQ
Ga0208280_10568	F006455	GGA	MNQQVKPPAGWAEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSHNIVTLPENYYQDNQVIDYVEVGLKPENAAETAHEWMEQNNRQ
Ga0208280_10569	F027372	GGAG	MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCLTIEKIGEKAAERAAEIGRDYAPTDMFAPDEHFEIPTDSAQYVNIIAPQLQQLAGYAPYDSTPTDIGYYIHKEDVLPAFREAYYSEAINRQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208280_1056

Overview

Ecosystem & Geography

Associated Families

Sequences