Scaffold Ga0268276_1105435

Overview

Basic Information

• Taxon OID: 3300028299
• Scaffold ID: Ga0268276_1105435
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 937
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F058143	Metagenome / Metatranscriptome	135	N
F101131	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0268276_11054353	F101131	GGA	MKKLCKDCKYYKKYYGYGGSTGIYDECTSPQTIKEKDMVRGVIHRSFCMYERLSHSGCGPDAKYFEQYEPPVPDKPWWTKNLEKLRNLLG
Ga0268276_11054354	F018714	GAGG	MTDFEYHKTLVIGVIIGASVFILTFYMLKPQNHTDTPKTNFAVVDTYKNCKVIQWTDGMQAEFKYFLDCSK
Ga0268276_11054355	F058143	N/A	ILKDDTETYYRISYNDEFQYVSWFRREYSILYPVDTELYDILTQKYFEVSND