NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268276_1105435

Scaffold Ga0268276_1105435


Overview

Basic Information
Taxon OID3300028299 Open in IMG/M
Scaffold IDGa0268276_1105435 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)937
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018714Metagenome233Y
F058143Metagenome / Metatranscriptome135N
F101131Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0268276_11054353F101131GGAMKKLCKDCKYYKKYYGYGGSTGIYDECTSPQTIKEKDMVRGVIHRSFCMYERLSHSGCGPDAKYFEQYEPPVPDKPWWTKNLEKLRNLLG
Ga0268276_11054354F018714GAGGMTDFEYHKTLVIGVIIGASVFILTFYMLKPQNHTDTPKTNFAVVDTYKNCKVIQWTDGMQAEFKYFLDCSK
Ga0268276_11054355F058143N/AILKDDTETYYRISYNDEFQYVSWFRREYSILYPVDTELYDILTQKYFEVSND

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