Scaffold Ga0268280_1033783

Overview

Basic Information

• Taxon OID: 3300028298
• Scaffold ID: Ga0268280_1033783
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1546
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055440	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268280_10337831	F055440	N/A	AKLQATLIKHLNQLLGADGAVATLKGKTAEGSEALTFYLMFERTGDQRYHKAAVSMADQVLKDMRATKFGALAIKEKEKADGKTILGGGAPALGNYAAGVAYILFKEGGRTNDLKYIATVIDRYPWNEAGWWAATIDVATGEPKEPLSKPSPINKSAAIAMAAGMISVYVHDADPALAARLKQKADKCIYSQLIPAQLADGFWHYGLTGNDSGNKDILGYFLLTTEELMKLQQFNPAYREEKLNAAVRKAQTFALKNIAPMTEPNHGPACKEHATRETPTHYSLKEHLKRLYELGRILLGGGYTDEGLKIMNAALEQFPVGNGGQDGAHAAEPSMLILFGL