NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228617_1026011

Scaffold Ga0228617_1026011


Overview

Basic Information
Taxon OID3300028297 Open in IMG/M
Scaffold IDGa0228617_1026011 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1893
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051922Metagenome / Metatranscriptome143N
F104988Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0228617_10260112F051922N/AMKRLSLYERLNPDVKAKLIANRLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPIDTTTMLRGDSNLIQPQNEVI
Ga0228617_10260114F104988N/AMTNREMTENRIAIENRNSRMLKQLIDPEFAFIDECETIADYIEEHLYDTLLWQLPINDEDIYQSNEDVDNYNEVHAEAMQQVVAILASRFFYKTDTNSER

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