Scaffold Ga0257126_1009334

Overview

Basic Information

• Taxon OID: 3300028287
• Scaffold ID: Ga0257126_1009334
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5319
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011743	Metagenome / Metatranscriptome	287	Y
F016507	Metagenome / Metatranscriptome	246	N
F036151	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257126_100933410	F011743	N/A	MNSMNRLTKISIAAAVVAALLWISSQDYDHEVTMSKEYRYNVCHGYWPDYQNLKPNCEGI
Ga0257126_100933414	F016507	AGG	MASKNLHTKTRNRLARQDALREYMQERGSVQYLFDIIEKIEKLDPESETFSQDLAKYSKVVDVRHKMLGKYLPELKATEITGEGGGDLQITVSDFKNA
Ga0257126_10093348	F036151	AGGA	MSLKPTRTELLTAWMTLVKVRETYCQPEIDQYEQTVLLDVLKMLDKLQQMEGKK