Scaffold Ga0257126_1000545

Overview

Basic Information

• Taxon OID: 3300028287
• Scaffold ID: Ga0257126_1000545
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30204
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F019312	Metagenome / Metatranscriptome	230	N
F031874	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257126_100054522	F031874	N/A	MVKRCLGNLKDIFLYADSQPTEIMLGALNFVLLLPATIIELGWIPIYQIYGLLVGGFQLFAVANKNINLRKTASLLSFTVFSTTVTFYALEGYLNNSASHWGWVVLWLSSLSSVKRVHSEFWHRQWNNKE
Ga0257126_100054539	F019312	N/A	MMTHTQAIYKAQIVFEEALSDKETIDQLLHIDAQMYANTGSDTSKAEMESIKRASAFIYRLIKGIDYDKGQRFIQAMGLTR
Ga0257126_100054543	F005010	N/A	MKTILRKRKHIRELQKFLEMLMIDNVNLSIQASRFGWSTELQDTITNNALLIRKYQRRLRLIRM