NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257120_1026094

Scaffold Ga0257120_1026094


Overview

Basic Information
Taxon OID3300028284 Open in IMG/M
Scaffold IDGa0257120_1026094 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1802
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022391Metagenome214N
F053660Metagenome141N
F088530Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0257120_10260942F053660GGAGMAKRGYERNETPMGAGRDHPNTRLIRWVGDRTDLGLVKNETYTWKELGAAVGIVASSMRGRVRGAPEVQDCHMWANGTRKPKEEWGVTTIVRCESKADKISQKYLRMKL
Ga0257120_10260943F088530GAGGMSLNYNKDLSKKEIQAAWDYALLSGAKHGVKMYRVFYDFMNAIGSNAAELYGLNYKKYYEPEFQDFFDGLELNRCRDRQRDGSLSCKFKMNDALSFVGARCLPLQLALLDRRVDLDDIVSNVRHYKWVRKNHTGKKTKKRTHDSYRYVNLKSLTFANQWSTVK
Ga0257120_10260944F022391GGAGMTQGDYVKVSSTTEVEAKLKHLESRIRGWNYQSPLAIKLMPFTDPTSLSQDALFNIWCREIADQMKAKTPSADAEAWKLWLKNKFLGTYAVKVGRETIEGQVYATPKGKAKMATFMHSVLIFADEKLRVRLSVPRNSEYVKVRENEQAKESKQKAKKEGHNPAGSGKGGSASAKTRSSKGEQQLGLL

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