Scaffold Ga0257120_1026094

Overview

Basic Information

• Taxon OID: 3300028284
• Scaffold ID: Ga0257120_1026094
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1802
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F053660	Metagenome	141	N
F088530	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257120_10260942	F053660	GGAG	MAKRGYERNETPMGAGRDHPNTRLIRWVGDRTDLGLVKNETYTWKELGAAVGIVASSMRGRVRGAPEVQDCHMWANGTRKPKEEWGVTTIVRCESKADKISQKYLRMKL
Ga0257120_10260943	F088530	GAGG	MSLNYNKDLSKKEIQAAWDYALLSGAKHGVKMYRVFYDFMNAIGSNAAELYGLNYKKYYEPEFQDFFDGLELNRCRDRQRDGSLSCKFKMNDALSFVGARCLPLQLALLDRRVDLDDIVSNVRHYKWVRKNHTGKKTKKRTHDSYRYVNLKSLTFANQWSTVK
Ga0257120_10260944	F022391	GGAG	MTQGDYVKVSSTTEVEAKLKHLESRIRGWNYQSPLAIKLMPFTDPTSLSQDALFNIWCREIADQMKAKTPSADAEAWKLWLKNKFLGTYAVKVGRETIEGQVYATPKGKAKMATFMHSVLIFADEKLRVRLSVPRNSEYVKVRENEQAKESKQKAKKEGHNPAGSGKGGSASAKTRSSKGEQQLGLL