Basic Information | |
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Taxon OID | 3300028284 Open in IMG/M |
Scaffold ID | Ga0257120_1023072 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1991 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F082204 | Metagenome / Metatranscriptome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0257120_10230721 | F082204 | AGGAGG | VTGLNKVFRLWLIKIGMGPVLLVLMVVLLAPGQQLEAKERVVLAMPELTLYANQGLVSGVLPKTAVQAGAIVEVPVAETTTLAGVYVMPAPGNRVRQLQLTPWLGSPQQTLQAYLGQTVEFLSPIAGSANSMTYETGTLKTVQPILVSTSKGLQTVGFDQLRFPDIGLTVSPHLALTIENAGSFSGHLAYLAPGLSWSANYEMVYDPRSHEVRIQSSAVLSNATQLLIENAGITVVAGQVSAVQSPRFQS |
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