Scaffold Ga0257120_1002778

Overview

Basic Information

• Taxon OID: 3300028284
• Scaffold ID: Ga0257120_1002778
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10206
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029110	Metagenome / Metatranscriptome	189	N
F033812	Metagenome / Metatranscriptome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257120_100277811	F033812	N/A	MEIGKQPTDQLLEFCFKTLNKALFEMSQNKAESDRKVLANILMNDLNEKFFRLDHQEVTQAFHRGVREGEEFSINPRTWFKWLNKQKLKANKLRIENSQEGERLQIESKCQQIDKEEVLREWLEVCLVELYELHVENEKYSFVGITRVFKWLEKNNLIYISDQEKVKLFNEVQEEIIARKKFVHNKKKIFDPRIMCREKAIKKQFGKWKIAKFDLRKEIYKIIGHEPKD
Ga0257120_100277812	F029110	N/A	MNQKISELLKENASNVANSETGSKKDIGGKKEVAKAWKEIQKDIKKIDKEFYEIIKDR