Scaffold Ga0257120_1001702

Overview

Basic Information

• Taxon OID: 3300028284
• Scaffold ID: Ga0257120_1001702
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14112
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F013571	Metagenome / Metatranscriptome	270	Y
F047678	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257120_100170224	F047678	N/A	MQINDKQIEKITGAIITSFVNLHFLEEVKASRLVKQKVKYNLKRTLNDLLEIENQYFDKIDNIDENNLSDKLVANKLEFVKWLLNKFDFNDFTKLQEVCTAYSLDPKKLTETSDSILEQNGAEIIK
Ga0257120_10017024	F013571	N/A	MEINLILLVPDAMIVGWQYYRPDDNFKYSEINIFLFFGQLQIRWTKYE
Ga0257120_10017026	F001728	N/A	MNSIVLKKTKKDYYRLILNGVDVTGEQERSVFRHILETVDNGIDK