Basic Information | |
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Taxon OID | 3300028284 Open in IMG/M |
Scaffold ID | Ga0257120_1001344 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16356 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (31.58%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004461 | Metagenome / Metatranscriptome | 437 | Y |
F063074 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0257120_10013446 | F063074 | N/A | MACTVTLADITYGCDDLGIGGIVELHVSSRAAALAVLTKDADNRQVSAASGAASDVVQFSFNLKDGFSSFSEVKTANADGTFSTVPTITAEFPKMDEARIKDLNAMSNGAPELVAFVKTAAGTYHICGLDFGLYVSTIDGNSGTGRGEKNRFQLTLTGEEAGLSYGIVGADAAAKEVIFAAATA |
Ga0257120_10013447 | F004461 | N/A | MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGNSAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTNATLSSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA |
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