Scaffold Ga0257120_1000116

Overview

Basic Information

• Taxon OID: 3300028284
• Scaffold ID: Ga0257120_1000116
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61244
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (14.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070571	Metagenome / Metatranscriptome	123	Y
F072518	Metagenome / Metatranscriptome	121	Y
F103892	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257120_100011665	F070571	N/A	MTKEELQVKIGTIESMISDSNIEISKYAGQLADLKKQHADLSKPKLTPQQYDKLQTLIEEAVESFDFDDSGNYSIDYGIDYDNRVTCESFCFDNSDEVVRIIMENVENMFAEATDDSDNS
Ga0257120_100011666	F072518	N/A	MGRKANVSVRYKNERVLKNLLSHAEEQVEHWKEYGFVGDTTYWQAKVDDLRGQLYALYHEREEFDKLAQF
Ga0257120_100011672	F103892	N/A	MHSIKYHSTKIITLNNTKFIPHKLHQLPKNYEEIPMSEQFHHKGFCYISAAELEWDKNKEARLTSNHVIGGLATR