Scaffold Ga0257120

Basic Information
Taxon OID	3300028284 Open in IMG/M
Scaffold ID	Ga0257120_1000039 Open in IMG/M
Source Dataset Name	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028284 Open in IMG/M

Scaffold ID

Ga0257120_1000039 Open in IMG/M

Source Dataset Name

Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	109222
Total Scaffold Genes	169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	133 (78.70%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

109222

Total Scaffold Genes

169 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

133 (78.70%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: British Columbia

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042906	Metagenome / Metatranscriptome	157	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0257120_1000039160	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKDFIRSITDQGILVDEMLIGPTDFLASENFYEVMPYLVDIINENSPILAFVSTLIDGDLERFVKYISDNINTDTEIEIGIATNPYNFFSIPYLERTKKALAYLDKNLEHEITYTFVVNIRDYNLDYAELHAYAIEKFDTILDFVPSVSRSHKAKIILETLDKFNEYFNVLRKGSHLNNIMVDHSHAGMNYTVLNYKKGEWYLSPFMYENMAIYDDMFKVETFDDAVRITEDQIERAKGTECEDCPMFFSCYNRKIISLRDYLGVDRCIAPKENMINNIHNYNAPAQTMYEWDGYTVENDKKGYRKKFLVTEDGDKELDRIKAISYVK
Ga0257120_1000039164	F040106	N/A	MRYSGPESLAPSDATKFDVLIQMEVLSGCEQGCLGCFVDKAIDPEVNQAIIDRAKELADGVKRVGGNLREFVIGPTDLFSAKNTKDILTNPTVQAIMREHTNARIASPAKFDNASMEKVREIFAILDDLDAYRREMVIEFIMPIGRINEMLDDDDYYNRVMEKIEFFKNETPKMMDWSWTLQASNVVGKQIDKEKYNRLIDRSVNDFGTIMEMNPAFARAPNQIIQRNNLFAWNRFLESVIDEDNRKEAVMSMANLYCNSINFVGITIVPGENGPTTHLNVMLHEQAFFLSNKNLDVTGLSFEEILQRKNELITKGINRSSKVKDCSDCKFAIACANRLVFEAQESLNIDGCVLPKETLKYYNPFDFTWNDDATQYKMKDGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257120_1000039

Overview

Ecosystem & Geography

Associated Families

Sequences