Scaffold Ga0268283_1071533

Overview

Basic Information

• Taxon OID: 3300028283
• Scaffold ID: Ga0268283_1071533
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_36m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1037
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010317	Metagenome / Metatranscriptome	305	Y
F035631	Metagenome / Metatranscriptome	171	N
F038644	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268283_10715331	F038644	N/A	MRTIKITQLPNGPWREYALEAQRRGIELVSDCSLSGTDVMLIGAIDMIRELTEKIEKKTE
Ga0268283_10715332	F010317	N/A	MKQIYIEKLAEVPGGLPAIKMEEHIAGESQGDNYSIPVEYNLEGSLIYDIEVGKNVIVDRTKRNGEEVCGLFTTSRVTEIGDNYFKTQNSVYSYKLL
Ga0268283_10715333	F035631	N/A	CSEVLIINKTLDNDMLRVYSFETMNIEKTFKLTIKDTSFYLDATEINALYNECGKALNIGNTNPSYPPGVTKQPSDYPSWPQPTDYPNWPTGYPFGTTTDYPSQYCHSDMTTDNFEFDSNTSLNPKSSKGINFIKDDMTTIKDNTIKDSANWRSSVQKALDKLSAKTNVTTNDGTTIR