NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256413_1170320

Scaffold Ga0256413_1170320


Overview

Basic Information
Taxon OID3300028282 Open in IMG/M
Scaffold IDGa0256413_1170320 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)787
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037937Metagenome / Metatranscriptome167N
F063074Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0256413_11703201F063074N/AMACTVTLADIDYGCDDLGIGGIVELHVASRAAALTAITTKDDSTRVISAVSGAASDVVQFSFNLKDGFSVFSEVKTANADGTFSTVPTISAEFPKMDATRITALDQMSNGAPELVAFVKTAAGTHHVCGLDFGLYVSTIDGNSGTGRSEKNRFQVTLTGEEAGLSYSITDTLFATATA
Ga0256413_11703202F037937N/AFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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