NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255174_1014191

Scaffold Ga0255174_1014191


Overview

Basic Information
Taxon OID3300028275 Open in IMG/M
Scaffold IDGa0255174_1014191 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1515
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F023789Metagenome / Metatranscriptome208Y
F027513Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0255174_10141912F027513N/AVHTENEQNNKARPHANRHTKPGQQIATNRAMHNDMRLIENGEGEYDAVVIRGDKYSLIRGEYIPIGCNFHYPKVWGRKYAATKLLEYIMADKRKQIEDAQRELAKLQRCLDKVNGWSDTD
Ga0255174_10141913F000785N/AMRVSNKIGMRFDCNRLWNWAYEKLGESRCAAIAFYWDTKETAECGYYDWEKTIWINLAQCKRMIAVQKTLLHEWTHAQQSYRWYNHYQLQYGYKNNPYEIQARENEKLVKRAYRKRTK
Ga0255174_10141914F023789N/AMDSINTHGLTQRERAELQFKIQRLQWLLNECIGIEEYELCTQIRNIIQRKYELLATNSTTNEVE
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