Scaffold Ga0255174

Basic Information
Taxon OID	3300028275 Open in IMG/M
Scaffold ID	Ga0255174_1007726 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028275 Open in IMG/M

Scaffold ID

Ga0255174_1007726 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2138
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2138

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F024557	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255174_10077262	F008494	GAGG	MNKEQAITSFMKAVKTYTTAIDKTAKTNIAYKKAVYALEDAVNQIYRDVDVKELGSNAEQRNAKISAQTAELISAKRELEYQLEVARADESRAKTECDQIKYIIRALEVKEEA
Ga0255174_10077264	F001561	N/A	MSMMIWNWNWKRMQTPKQKLAYLKKTIETLWHGVTETKDGDYPRIVNLYKEVLKIDSYDRDAWENMIWLMWSISKNQKDTVWLLEAEKYAKRYLSVLPNGYRSYEYVGQVYRVMVGDKKLATRYYESAIRWKDAPASCYHSLISLFIEVNDKVKARDYCIMALKRFKNDSYVTMRLKQLDAR
Ga0255174_10077265	F024557	N/A	MNSRVWIYFSKTGTGFEMIGSDIISGIDAYHGTDGTYLIEYSHSDLMNDMHFFVYEWDNSQKKRRTVYEAYQKEIVLMGMVKNIDSLPINIQQKILSMYVNDDMELELEKNANS
Ga0255174_10077266	F008552	N/A	MIISFEASANVDTTLFGYFSMEYDPEFFNDIKENLTEISKEDTLTFNLDPEEVKLIHSSYDNVKKVISIAEVEENKFTTVFKRKFDSTGFKIFRNVKLHIDRDYFYFTGFYDTNAGTNPIEFQSLNFDVRFIDTLEQKYKSMVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255174_1007726

Overview

Ecosystem & Geography

Associated Families

Sequences