NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268304_1008418

Scaffold Ga0268304_1008418


Overview

Basic Information
Taxon OID3300028256 Open in IMG/M
Scaffold IDGa0268304_1008418 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_15MAY2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)611
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000255Metagenome / Metatranscriptome1449Y
F004540Metagenome / Metatranscriptome433Y

Sequences

Protein IDFamilyRBSSequence
Ga0268304_10084181F004540N/AVNSCFCVLHSVWVHLGSIRNCIKLDAKQGELVQLMQKFVPRSHVGIFRNERTQSTPLDPELMFWCIAYCLGA
Ga0268304_10084182F000255AGGMGWILCVRREKSRRDFVARAFALIALVHPVLHRVSCGYEKIPNAPKHYATHQNMSLGSNGVDWVRSLQKNP

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