NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268312_1008527

Scaffold Ga0268312_1008527


Overview

Basic Information
Taxon OID3300028248 Open in IMG/M
Scaffold IDGa0268312_1008527 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_05JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018302Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0268312_10085271F018302N/AASFIQAAVRLQAAARGLLARRQLQKMRLEMQEAALTAIDLGNWGSDLGKWGRDLVPSEGHQRSRQLAVVFKRALGSELQFYSSDKGGAFLLVIGGGTSPSVITFRHRPPRGRLRWSLLRLISGGDTCPPLSFRWSPWDPGGYLRAGPAQGGCPPYLQESKIKNCSLFKISRDVKGLFLGFRFASSGVIVSVIVRLQLEDELHVQVGCSVRGVKGLLGLSPLGLISRLLRGQVNLSI

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