Scaffold Ga0256417_1084831

Overview

Basic Information

• Taxon OID: 3300028233
• Scaffold ID: Ga0256417_1084831
• Source Dataset Name: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - MB_1026D (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 856
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F017146	Metagenome / Metatranscriptome	242	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256417_10848311	F063773	AGGTGG	MAQEFTINSSAIETKINQLLPSQGGFGAGIDFSASTMVIPIIDLTETASGS
Ga0256417_10848312	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNSEFSKNASVSALVTGEPFGWNGNYAMNDMVTQGAVRNRPVITFTNGTSATRTVDVAVFIGG
Ga0256417_10848313	F017146	N/A	GASLLGGGNGGMRITRKMKSQYKAVLNLANGDYDQAAAMIGVSTDMFIAVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK